Detailed information of SNP:
|
SNP ID:
sf0826360114(Gbrowse)
Chromosome: chr08 Position: 26360114 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 64.84% | 35.16% |
| All Indica | 797 | 88.71% | 11.29% |
| All Japonica | 497 | 25.15% | 74.85% |
| Aus | 58 | 84.48% | 15.52% |
| Indica I | 373 | 87.40% | 12.60% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826360114 | T->C | INTERGENIC | None |