Detailed information of SNP:
|
SNP ID:
sf0826360502(Gbrowse)
Chromosome: chr08 Position: 26360502 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 93.57% | 6.43% |
| All Indica | 784 | 91.07% | 8.93% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 372 | 90.86% | 9.14% |
| Indica II | 207 | 88.41% | 11.59% |
| Indica Intermediate | 205 | 94.15% | 5.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826360502 | C->T | INTERGENIC | None |