Detailed information of SNP:
|
SNP ID:
sf0826395672(Gbrowse)
Chromosome: chr08 Position: 26395672 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 93.01% | 6.99% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 33.85% | 66.15% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826395672 | G->A | LOC_Os08g41800(LOC_Os08g41800.1) | Non-Synonymous SNP |