Detailed information of SNP:
|
SNP ID:
sf0826554647(Gbrowse)
Chromosome: chr08 Position: 26554647 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 59.60% | 40.40% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826554647 | G->A | INTERGENIC | None |