Detailed information of SNP:
|
SNP ID:
sf0826607916(Gbrowse)
Chromosome: chr08 Position: 26607916 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 54.57% | 45.43% |
| All Indica | 791 | 85.08% | 14.92% |
| All Japonica | 497 | 9.86% | 90.14% |
| Aus | 47 | 31.91% | 68.09% |
| Indica I | 369 | 74.25% | 25.75% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826607916 | C->T | INTERGENIC | None |