Detailed information of SNP:
|
SNP ID:
sf0826619657(Gbrowse)
Chromosome: chr08 Position: 26619657 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1284 | 67.13% | 32.87% |
| All Indica | 689 | 44.41% | 55.59% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 47 | 31.91% | 68.09% |
| Indica I | 303 | 63.04% | 36.96% |
| Indica II | 202 | 16.34% | 83.66% |
| Indica Intermediate | 184 | 44.57% | 55.43% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826619657 | C->T | LOC_Os08g42130(LOC_Os08g42130.1) | Non-Synonymous SNP |