Detailed information of SNP:
|
SNP ID:
sf0826635165(Gbrowse)
Chromosome: chr08 Position: 26635165 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 66.74% | 33.26% |
| All Indica | 790 | 42.28% | 57.72% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 369 | 60.70% | 39.30% |
| Indica II | 212 | 13.68% | 86.32% |
| Indica Intermediate | 209 | 38.76% | 61.24% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826635165 | G->A | INTERGENIC | None |