Detailed information of SNP:
|
SNP ID:
sf0826644570(Gbrowse)
Chromosome: chr08 Position: 26644570 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 69.43% | 30.57% |
| All Indica | 790 | 46.84% | 53.16% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 62.37% | 37.63% |
| Indica II | 210 | 24.76% | 75.24% |
| Indica Intermediate | 208 | 41.35% | 58.65% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826644570 | C->T | INTERGENIC | None |