Detailed information of SNP:
|
SNP ID:
sf0826644948(Gbrowse)
Chromosome: chr08 Position: 26644948 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 67.41% | 32.59% |
| All Indica | 776 | 44.07% | 55.93% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 362 | 59.94% | 40.06% |
| Indica II | 209 | 21.05% | 78.95% |
| Indica Intermediate | 205 | 39.51% | 60.49% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826644948 | A->G | INTERGENIC | None |