Detailed information of SNP:
|
SNP ID:
sf0826834689(Gbrowse)
Chromosome: chr08 Position: 26834689 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1369 | 68.81% | 31.19% |
| All Indica | 751 | 55.66% | 44.34% |
| All Japonica | 496 | 84.68% | 15.32% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 356 | 69.94% | 30.06% |
| Indica II | 203 | 40.89% | 59.11% |
| Indica Intermediate | 192 | 44.79% | 55.21% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 93 | 59.14% | 40.86% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826834689 | T->G | INTERGENIC | None |