Detailed information of SNP:
|
SNP ID:
sf0826862334(Gbrowse)
Chromosome: chr08 Position: 26862334 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.77% | 32.23% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 496 | 21.77% | 78.23% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 93 | 54.84% | 45.16% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826862334 | T->C | LOC_Os08g42500(LOC_Os08g42500.1) | Non-Synonymous SNP |