Detailed information of SNP:
|
SNP ID:
sf0826905946(Gbrowse)
Chromosome: chr08 Position: 26905946 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 80.14% | 19.86% |
| All Indica | 796 | 65.58% | 34.42% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 54.30% | 45.70% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826905946 | C->T | INTERGENIC | None |