Detailed information of SNP:
|
SNP ID:
sf0826932803(Gbrowse)
Chromosome: chr08 Position: 26932803 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 52.40% | 47.60% |
| All Indica | 798 | 28.57% | 71.43% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 30.13% | 69.87% |
| Indica II | 213 | 17.84% | 82.16% |
| Indica Intermediate | 210 | 36.67% | 63.33% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826932803 | T->C | INTERGENIC | None |