Detailed information of SNP:
|
SNP ID:
sf0826932819(Gbrowse)
Chromosome: chr08 Position: 26932819 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 61.69% | 38.31% |
| All Indica | 787 | 84.75% | 15.25% |
| All Japonica | 497 | 22.74% | 77.26% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 372 | 85.75% | 14.25% |
| Indica II | 207 | 74.88% | 25.12% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826932819 | G->A | INTERGENIC | None |