Detailed information of SNP:
|
SNP ID:
sf0826933777(Gbrowse)
Chromosome: chr08 Position: 26933777 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 93.44% | 6.56% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 87.17% | 12.83% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826933777 | G->A | INTERGENIC | None |