Detailed information of SNP:
|
SNP ID:
sf0826944377(Gbrowse)
Chromosome: chr08 Position: 26944377 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 80.84% | 19.16% |
| All Indica | 792 | 78.54% | 21.46% |
| All Japonica | 496 | 89.72% | 10.28% |
| Aus | 65 | 35.38% | 64.62% |
| Indica I | 371 | 81.94% | 18.06% |
| Indica II | 211 | 80.57% | 19.43% |
| Indica Intermediate | 210 | 70.48% | 29.52% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826944377 | C->T | INTERGENIC | None |