Detailed information of SNP:
|
SNP ID:
sf0827001691(Gbrowse)
Chromosome: chr08 Position: 27001691 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1331 | 76.86% | 23.14% |
| All Indica | 721 | 59.22% | 40.78% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 335 | 59.40% | 40.60% |
| Indica II | 193 | 55.96% | 44.04% |
| Indica Intermediate | 193 | 62.18% | 37.82% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827001691 | C->T | INTERGENIC | None |