Detailed information of SNP:
|
SNP ID:
sf0827004174(Gbrowse)
Chromosome: chr08 Position: 27004174 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 73.90% | 26.10% |
| All Indica | 791 | 55.88% | 44.12% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 49.33% | 50.67% |
| Indica II | 205 | 61.95% | 38.05% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827004174 | G->A | INTERGENIC | None |