Detailed information of SNP:
|
SNP ID:
sf0827011259(Gbrowse)
Chromosome: chr08 Position: 27011259 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 62.03% | 37.97% |
| All Indica | 776 | 34.92% | 65.08% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 365 | 27.95% | 72.05% |
| Indica II | 203 | 42.36% | 57.64% |
| Indica Intermediate | 208 | 39.90% | 60.10% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827011259 | C->T | INTERGENIC | None |