Detailed information of SNP:
|
SNP ID:
sf0827026951(Gbrowse)
Chromosome: chr08 Position: 27026951 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 88.71% | 11.29% |
| All Indica | 797 | 83.69% | 16.31% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 211 | 72.99% | 27.01% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827026951 | T->A | LOC_Os08g42720(LOC_Os08g42720.1) | INTRON |