Detailed information of SNP:
|
SNP ID:
sf0827028257(Gbrowse)
Chromosome: chr08 Position: 27028257 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 95.70% | 4.30% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827028257 | T->C | LOC_Os08g42720(LOC_Os08g42720.1) | INTRON |