Detailed information of SNP:
|
SNP ID:
sf0827030669(Gbrowse)
Chromosome: chr08 Position: 27030669 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 96.68% | 3.32% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 466 | 90.34% | 9.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 99.38% | 0.62% |
| Tropical Japonica | 85 | 57.65% | 42.35% |
| Japonica Intermediate | 56 | 87.50% | 12.50% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827030669 | G->A | INTERGENIC | None |