Detailed information of SNP:
|
SNP ID:
sf0827074102(Gbrowse)
Chromosome: chr08 Position: 27074102 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 88.43% | 11.57% |
| All Indica | 798 | 85.84% | 14.16% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 212 | 82.08% | 17.92% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827074102 | A->G | INTERGENIC | None |