Detailed information of SNP:
|
SNP ID:
sf0827074937(Gbrowse)
Chromosome: chr08 Position: 27074937 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 60.59% | 39.41% |
| All Indica | 796 | 41.21% | 58.79% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 32.27% | 67.73% |
| Indica II | 212 | 47.64% | 52.36% |
| Indica Intermediate | 209 | 50.72% | 49.28% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827074937 | A->G | LOC_Os08g42820(LOC_Os08g42820.1) | INTRON |