Detailed information of SNP:
|
SNP ID:
sf0827093822(Gbrowse)
Chromosome: chr08 Position: 27093822 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 76.27% | 23.73% |
| All Indica | 787 | 60.36% | 39.64% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 60 | 80.00% | 20.00% |
| Indica I | 368 | 51.90% | 48.10% |
| Indica II | 209 | 71.29% | 28.71% |
| Indica Intermediate | 210 | 64.29% | 35.71% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827093822 | C->T | INTERGENIC | None |