Detailed information of SNP:
|
SNP ID:
sf0827143848(Gbrowse)
Chromosome: chr08 Position: 27143848 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1158 | 94.65% | 5.35% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 251 | 76.49% | 23.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 176 | 67.61% | 32.39% |
| Tropical Japonica | 43 | 97.67% | 2.33% |
| Japonica Intermediate | 32 | 96.88% | 3.12% |
| Group VI/Aromatic | 8 | 100.00% | 0.00% |
| Intermediate | 34 | 94.12% | 5.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827143848 | T->A | INTERGENIC | None |