Detailed information of SNP:
SNP ID:
sf0827194574(Gbrowse)
Chromosome: chr08 Position: 27194574 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1412 | 60.55% | 39.45% |
All Indica | 792 | 94.32% | 5.68% |
All Japonica | 497 | 2.82% | 97.18% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 206 | 80.10% | 19.90% |
Indica Intermediate | 211 | 98.10% | 1.90% |
Temperate Japonica | 335 | 2.39% | 97.61% |
Tropical Japonica | 94 | 5.32% | 94.68% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 21.43% | 78.57% |
Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0827194574 | A->G | LOC_Os08g43020(LOC_Os08g43020.1) | Non-Synonymous SNP |