Detailed information of SNP:
|
SNP ID:
sf0827199830(Gbrowse)
Chromosome: chr08 Position: 27199830 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1357 | 66.69% | 33.31% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 436 | 3.21% | 96.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 315 | 2.22% | 97.78% |
| Tropical Japonica | 89 | 5.62% | 94.38% |
| Japonica Intermediate | 32 | 6.25% | 93.75% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827199830 | C->G | LOC_Os08g43040(LOC_Os08g43040.2) | INTRON |
| sf0827199830 | C->G | LOC_Os08g43040(LOC_Os08g43040.1) | INTRON |