Detailed information of SNP:
|
SNP ID:
sf0827222675(Gbrowse)
Chromosome: chr08 Position: 27222675 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.66% | 43.34% |
| All Indica | 799 | 88.61% | 11.39% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827222675 | T->C | INTERGENIC | None |