Detailed information of SNP:
|
SNP ID:
sf0827223089(Gbrowse)
Chromosome: chr08 Position: 27223089 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 58.79% | 41.21% |
| All Indica | 790 | 29.49% | 70.51% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 24.46% | 75.54% |
| Indica II | 208 | 38.94% | 61.06% |
| Indica Intermediate | 210 | 29.05% | 70.95% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827223089 | C->T | INTERGENIC | None |