Detailed information of SNP:
|
SNP ID:
sf0827223897(Gbrowse)
Chromosome: chr08 Position: 27223897 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 74.93% | 25.07% |
| All Indica | 797 | 65.37% | 34.63% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 67.91% | 32.09% |
| Indica II | 212 | 60.38% | 39.62% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827223897 | A->G | INTERGENIC | None |