Detailed information of SNP:
|
SNP ID:
sf0827232727(Gbrowse)
Chromosome: chr08 Position: 27232727 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 61.58% | 38.42% |
| All Indica | 784 | 91.58% | 8.42% |
| All Japonica | 497 | 13.88% | 86.12% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 198 | 89.39% | 10.61% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827232727 | T->A | INTERGENIC | None |