Detailed information of SNP:
|
SNP ID:
sf0827292562(Gbrowse)
Chromosome: chr08 Position: 27292562 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 93.67% | 6.33% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 470 | 81.49% | 18.51% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 319 | 77.12% | 22.88% |
| Tropical Japonica | 86 | 86.05% | 13.95% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827292562 | C->T | INTERGENIC | None |