Detailed information of SNP:
|
SNP ID:
sf0827339268(Gbrowse)
Chromosome: chr08 Position: 27339268 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 82.78% | 17.22% |
| All Indica | 797 | 76.16% | 23.84% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 373 | 79.36% | 20.64% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827339268 | G->A | INTERGENIC | None |