Detailed information of SNP:



SNP ID: sf0827339884(Gbrowse)

Chromosome: chr08

Position: 27339884
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1418 96.40% 3.60%
All Indica799 99.75% 0.25%
All Japonica497 100.00% 0.00%
Aus66 33.33% 66.67%
Indica I375 100.00% 0.00%
Indica II213 99.06% 0.94%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0827339884 T->C INTERGENIC None