Detailed information of SNP:
|
SNP ID:
sf0827357684(Gbrowse)
Chromosome: chr08 Position: 27357684 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 96.95% | 3.05% |
| All Indica | 794 | 96.73% | 3.27% |
| All Japonica | 462 | 96.75% | 3.25% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 318 | 95.91% | 4.09% |
| Tropical Japonica | 80 | 98.75% | 1.25% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827357684 | A->C | LOC_Os08g43280(LOC_Os08g43280.1) | INTRON |