Detailed information of SNP:
|
SNP ID:
sf0827369799(Gbrowse)
Chromosome: chr08 Position: 27369799 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 93.15% | 6.85% |
| All Indica | 797 | 89.71% | 10.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 212 | 76.42% | 23.58% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827369799 | T->C | INTERGENIC | None |