Detailed information of SNP:
|
SNP ID:
sf0827540519(Gbrowse)
Chromosome: chr08 Position: 27540519 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 58.97% | 41.03% |
| All Indica | 796 | 93.47% | 6.53% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827540519 | A->G | INTERGENIC | None |