Detailed information of SNP:
|
SNP ID:
sf0827550956(Gbrowse)
Chromosome: chr08 Position: 27550956 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1292 | 96.75% | 3.25% |
| All Indica | 676 | 94.08% | 5.92% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 284 | 89.08% | 10.92% |
| Indica II | 202 | 98.02% | 1.98% |
| Indica Intermediate | 190 | 97.37% | 2.63% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827550956 | C->G | INTERGENIC | None |