Detailed information of SNP:
|
SNP ID:
sf0827570001(Gbrowse)
Chromosome: chr08 Position: 27570001 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1307 | 97.40% | 2.60% |
| All Indica | 690 | 95.07% | 4.93% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 345 | 98.26% | 1.74% |
| Indica II | 176 | 95.45% | 4.55% |
| Indica Intermediate | 169 | 88.17% | 11.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827570001 | C->T | INTERGENIC | None |