Detailed information of SNP:
|
SNP ID:
sf0827578817(Gbrowse)
Chromosome: chr08 Position: 27578817 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 63.50% | 36.50% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 12.27% | 87.73% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827578817 | G->A | INTERGENIC | None |