Detailed information of SNP:
|
SNP ID:
sf0827592898(Gbrowse)
Chromosome: chr08 Position: 27592898 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 98.36% | 1.64% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 478 | 96.03% | 3.97% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 94.39% | 5.61% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827592898 | C->T | LOC_Os08g43654(LOC_Os08g43654.1) | INTRON |