Detailed information of SNP:
|
SNP ID:
sf0827601454(Gbrowse)
Chromosome: chr08 Position: 27601454 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 90.17% | 9.83% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 444 | 73.87% | 26.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 295 | 66.44% | 33.56% |
| Tropical Japonica | 83 | 91.57% | 8.43% |
| Japonica Intermediate | 66 | 84.85% | 15.15% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827601454 | A->G | INTERGENIC | None |