Detailed information of SNP:
|
SNP ID:
sf0827700745(Gbrowse)
Chromosome: chr08 Position: 27700745 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 97.53% | 2.47% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827700745 | C->T | LOC_Os08g44010(LOC_Os08g44010.5) | UTR_5_PRIME |
| sf0827700745 | C->T | LOC_Os08g44010(LOC_Os08g44010.4) | UTR_5_PRIME |
| sf0827700745 | C->T | LOC_Os08g44010(LOC_Os08g44010.2) | UTR_5_PRIME |
| sf0827700745 | C->T | LOC_Os08g44010(LOC_Os08g44010.1) | UTR_5_PRIME |
| sf0827700745 | C->T | LOC_Os08g44010(LOC_Os08g44010.3) | UTR_5_PRIME |