Detailed information of SNP:
|
SNP ID:
sf0827749717(Gbrowse)
Chromosome: chr08 Position: 27749717 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 68.58% | 31.42% |
| All Indica | 774 | 48.19% | 51.81% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 25.13% | 74.87% |
| Indica II | 209 | 71.77% | 28.23% |
| Indica Intermediate | 191 | 67.54% | 32.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827749717 | T->C | INTERGENIC | None |