Detailed information of SNP:
|
SNP ID:
sf0827765433(Gbrowse)
Chromosome: chr08 Position: 27765433 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 54.03% | 45.97% |
| All Indica | 772 | 27.98% | 72.02% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 357 | 25.77% | 74.23% |
| Indica II | 209 | 32.06% | 67.94% |
| Indica Intermediate | 206 | 27.67% | 72.33% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827765433 | T->C | INTERGENIC | None |