Detailed information of SNP:
|
SNP ID:
sf0827784875(Gbrowse)
Chromosome: chr08 Position: 27784875 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 52.26% | 47.74% |
| All Indica | 796 | 82.29% | 17.71% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 78.55% | 21.45% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827784875 | G->A | INTERGENIC | None |