Detailed information of SNP:
|
SNP ID:
sf0827833037(Gbrowse)
Chromosome: chr08 Position: 27833037 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 88.47% | 11.53% |
| All Indica | 765 | 79.74% | 20.26% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 73.15% | 26.85% |
| Indica II | 202 | 93.56% | 6.44% |
| Indica Intermediate | 198 | 77.78% | 22.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0827833037 | C->G | LOC_Os08g44220(LOC_Os08g44220.1) | INTRON |