Detailed information of SNP:
|
SNP ID:
sf0828019644(Gbrowse)
Chromosome: chr08 Position: 28019644 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 69.37% | 30.63% |
| All Indica | 776 | 98.07% | 1.93% |
| All Japonica | 497 | 22.54% | 77.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 99.45% | 0.55% |
| Indica II | 205 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 31.94% | 68.06% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828019644 | G->C | INTERGENIC | None |