Detailed information of SNP:
|
SNP ID:
sf0828037868(Gbrowse)
Chromosome: chr08 Position: 28037868 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 66.08% | 33.92% |
| All Indica | 797 | 97.49% | 2.51% |
| All Japonica | 497 | 22.33% | 77.67% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 32.24% | 67.76% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0828037868 | G->A | INTERGENIC | None |